ZPR_2238 protein (Zunongwangia profunda) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ZPR_2238

PqqL-like family 16 peptidase. (938 aa)

Predicted Functional Partners:

ZPR_1401

0.935

ZPR_2239

0.838

ZPR_2240

0.736

ZPR_4052

0.684

atpA

0.656

ZPR_2137

0.626

ZPR_1406

0.618

ZPR_0064

0.614

atpG

0.589

ZPR_1407

0.560

Your Current Organism:

Zunongwangia profunda

NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ZPR_0064	ZPR_1401	ZPR_0064	ZPR_1401	ATP synthase subunit delta (OSCP).	Cytochrome c oxidase, subunit II.	0.974
ZPR_0064	ZPR_1406	ZPR_0064	ZPR_1406	ATP synthase subunit delta (OSCP).	Rieske (2Fe-2S) domain-containing protein.	0.762
ZPR_0064	ZPR_1407	ZPR_0064	ZPR_1407	ATP synthase subunit delta (OSCP).	Cytochrome b/b6 domain protein.	0.749
ZPR_0064	ZPR_2137	ZPR_0064	ZPR_2137	ATP synthase subunit delta (OSCP).	Ferredoxin-like protein.	0.669
ZPR_0064	ZPR_2238	ZPR_0064	ZPR_2238	ATP synthase subunit delta (OSCP).	PqqL-like family 16 peptidase.	0.614
ZPR_0064	ZPR_4052	ZPR_0064	ZPR_4052	ATP synthase subunit delta (OSCP).	Rieske.	0.806
ZPR_0064	atpA	ZPR_0064	ZPR_0065	ATP synthase subunit delta (OSCP).	F0F1 ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.	0.999
ZPR_0064	atpG	ZPR_0064	ZPR_0066	ATP synthase subunit delta (OSCP).	ATP synthase subunit gamma; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.	0.999
ZPR_1401	ZPR_0064	ZPR_1401	ZPR_0064	Cytochrome c oxidase, subunit II.	ATP synthase subunit delta (OSCP).	0.974
ZPR_1401	ZPR_1406	ZPR_1401	ZPR_1406	Cytochrome c oxidase, subunit II.	Rieske (2Fe-2S) domain-containing protein.	0.999
ZPR_1401	ZPR_1407	ZPR_1401	ZPR_1407	Cytochrome c oxidase, subunit II.	Cytochrome b/b6 domain protein.	0.999
ZPR_1401	ZPR_2137	ZPR_1401	ZPR_2137	Cytochrome c oxidase, subunit II.	Ferredoxin-like protein.	0.994
ZPR_1401	ZPR_2238	ZPR_1401	ZPR_2238	Cytochrome c oxidase, subunit II.	PqqL-like family 16 peptidase.	0.935
ZPR_1401	ZPR_4052	ZPR_1401	ZPR_4052	Cytochrome c oxidase, subunit II.	Rieske.	0.997
ZPR_1401	atpA	ZPR_1401	ZPR_0065	Cytochrome c oxidase, subunit II.	F0F1 ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.	0.968
ZPR_1401	atpG	ZPR_1401	ZPR_0066	Cytochrome c oxidase, subunit II.	ATP synthase subunit gamma; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.	0.987
ZPR_1406	ZPR_0064	ZPR_1406	ZPR_0064	Rieske (2Fe-2S) domain-containing protein.	ATP synthase subunit delta (OSCP).	0.762
ZPR_1406	ZPR_1401	ZPR_1406	ZPR_1401	Rieske (2Fe-2S) domain-containing protein.	Cytochrome c oxidase, subunit II.	0.999
ZPR_1406	ZPR_1407	ZPR_1406	ZPR_1407	Rieske (2Fe-2S) domain-containing protein.	Cytochrome b/b6 domain protein.	0.999
ZPR_1406	ZPR_2137	ZPR_1406	ZPR_2137	Rieske (2Fe-2S) domain-containing protein.	Ferredoxin-like protein.	0.893