Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ZPR_2285Pseudouridylate synthase; Belongs to the pseudouridine synthase RsuA family. (190 aa)    
Predicted Functional Partners:
cmk
Cytidylate kinase.
 
  
 0.708
ZPR_4529
Exodeoxyribonuclease.
  
    0.681
der
GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.671
ZPR_1699
Pseudouridylate synthase.
 
 
 0.628
ZPR_4207
Putative ribosomal large subunit pseudouridine synthase.
  
     0.569
ZPR_3605
Bcr/CflA family drug resistance transporter.
      0.567
ZPR_2286
Transcriptional regulator, MarR family protein.
       0.551
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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