Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
ZPR_2298Transcriptional regulatory protein. (233 aa)    
Predicted Functional Partners:
ZPR_2299
Probable cation-transporting P-type ATPase.
 
     0.742
ZPR_1042
Transcriptional regulator.
  
     0.674
ZPR_2301
Probable cytochrome oxidase subunit (cbb3-type); Belongs to the heme-copper respiratory oxidase family.
 
  
 0.624
ZPR_2305
Conserved hypothetical protein.
 
    0.560
ZPR_2303
Cbb3-type cytochrome c oxidase subunit III.
 
   
 0.518
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.516
ZPR_2304
Probable iron-sulfur protein.
 
  
 0.494
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.494
ZPR_2300
Cytochrome oxidase maturation protein.
  
    0.467
ZPR_2302
Conserved hypothetical protein.
 
   
 0.455
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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