Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_2437Conserved hypothetical protein. (251 aa)    
Predicted Functional Partners:
ZPR_2442
Glucoside 3-dehydrogenase.
 
     0.820
ZPR_2440
Nucleoside:proton symporter.
 
     0.818
ZPR_2441
Xylose isomerase-like protein.
 
     0.811
ZPR_2443
Conserved hypothetical protein.
 
     0.804
ZPR_4657
Putative dehydrogenase.
 
     0.780
ZPR_2572
Putative dehydrogenase.
 
     0.778
ZPR_1939
Putative multi-domain protein.
 
     0.768
ZPR_2439
Oxidoreductase family protein.
 
     0.720
ZPR_2831
Xylose isomerase-like protein.
 
   
 0.720
ZPR_2992
Putative dehydrogenase.
 
     0.713
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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