ZPR_2444 protein (Zunongwangia profunda) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ZPR_2444

Probable bacterial effector-binding protein. (299 aa)

Predicted Functional Partners:

ZPR_2445

0.945

ZPR_2446

0.943

ZPR_2447

0.938

ZPR_2448

0.866

ZPR_2449

0.810

rpoB

0.608

ZPR_3606

0.561

ZPR_2949

0.522

ZPR_2441

0.510

ZPR_4277

0.510

Your Current Organism:

Zunongwangia profunda

NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ZPR_2441	ZPR_2444	ZPR_2441	ZPR_2444	Xylose isomerase-like protein.	Probable bacterial effector-binding protein.	0.510
ZPR_2441	ZPR_2446	ZPR_2441	ZPR_2446	Xylose isomerase-like protein.	FG-GAP repeat-containing protein.	0.481
ZPR_2444	ZPR_2441	ZPR_2444	ZPR_2441	Probable bacterial effector-binding protein.	Xylose isomerase-like protein.	0.510
ZPR_2444	ZPR_2445	ZPR_2444	ZPR_2445	Probable bacterial effector-binding protein.	Acid phosphatase/vanadium-dependent haloperoxidase.	0.945
ZPR_2444	ZPR_2446	ZPR_2444	ZPR_2446	Probable bacterial effector-binding protein.	FG-GAP repeat-containing protein.	0.943
ZPR_2444	ZPR_2447	ZPR_2444	ZPR_2447	Probable bacterial effector-binding protein.	FG-GAP repeat-containing protein.	0.938
ZPR_2444	ZPR_2448	ZPR_2444	ZPR_2448	Probable bacterial effector-binding protein.	SusD/RagB family protein.	0.866
ZPR_2444	ZPR_2449	ZPR_2444	ZPR_2449	Probable bacterial effector-binding protein.	TonB-dependent outer membrane receptor.	0.810
ZPR_2444	ZPR_2949	ZPR_2444	ZPR_2949	Probable bacterial effector-binding protein.	Rhs family protein.	0.522
ZPR_2444	ZPR_3606	ZPR_2444	ZPR_3606	Probable bacterial effector-binding protein.	Membrane protein.	0.561
ZPR_2444	ZPR_4277	ZPR_2444	ZPR_4277	Probable bacterial effector-binding protein.	Conserved hypothetical protein.	0.510
ZPR_2444	rpoB	ZPR_2444	ZPR_1168	Probable bacterial effector-binding protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.608
ZPR_2445	ZPR_2444	ZPR_2445	ZPR_2444	Acid phosphatase/vanadium-dependent haloperoxidase.	Probable bacterial effector-binding protein.	0.945
ZPR_2445	ZPR_2446	ZPR_2445	ZPR_2446	Acid phosphatase/vanadium-dependent haloperoxidase.	FG-GAP repeat-containing protein.	0.951
ZPR_2445	ZPR_2447	ZPR_2445	ZPR_2447	Acid phosphatase/vanadium-dependent haloperoxidase.	FG-GAP repeat-containing protein.	0.951
ZPR_2445	ZPR_2448	ZPR_2445	ZPR_2448	Acid phosphatase/vanadium-dependent haloperoxidase.	SusD/RagB family protein.	0.842
ZPR_2445	ZPR_2449	ZPR_2445	ZPR_2449	Acid phosphatase/vanadium-dependent haloperoxidase.	TonB-dependent outer membrane receptor.	0.714
ZPR_2445	ZPR_2949	ZPR_2445	ZPR_2949	Acid phosphatase/vanadium-dependent haloperoxidase.	Rhs family protein.	0.795
ZPR_2446	ZPR_2441	ZPR_2446	ZPR_2441	FG-GAP repeat-containing protein.	Xylose isomerase-like protein.	0.481
ZPR_2446	ZPR_2444	ZPR_2446	ZPR_2444	FG-GAP repeat-containing protein.	Probable bacterial effector-binding protein.	0.943