ZPR_2467 protein (Zunongwangia profunda) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ZPR_2467

acyl-CoA dehydrogenase. (602 aa)

Predicted Functional Partners:

ZPR_2469

0.996

ZPR_3660

0.967

ZPR_3659

0.949

ZPR_2468

0.912

ZPR_3230

0.909

ZPR_0120

0.879

ZPR_0261

0.781

ZPR_2596

0.754

ZPR_2471

0.749

ZPR_0804

0.694

Your Current Organism:

Zunongwangia profunda

NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ZPR_0120	ZPR_2467	3-hydroxybutyryl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	acyl-CoA dehydrogenase.	0.879
ZPR_0120	ZPR_2468	3-hydroxybutyryl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.967
ZPR_0120	ZPR_2469	3-hydroxybutyryl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	3-hydroxyacyl-CoA dehydrogenase.	0.954
ZPR_0120	ZPR_2596	3-hydroxybutyryl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	acetoacetyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.952
ZPR_0120	ZPR_3230	3-hydroxybutyryl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	3-hydroxybutyryl-CoA dehydrogenase.	0.998
ZPR_0120	ZPR_3659	3-hydroxybutyryl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	Electron transfer flavoprotein subunit beta.	0.659
ZPR_0120	ZPR_3660	3-hydroxybutyryl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	Electron transfer flavoprotein subunit alpha.	0.817
ZPR_0261	ZPR_2467	enoyl-CoA hydratase/isomerase family protein.	acyl-CoA dehydrogenase.	0.781
ZPR_0261	ZPR_2468	enoyl-CoA hydratase/isomerase family protein.	3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.898
ZPR_0261	ZPR_2469	enoyl-CoA hydratase/isomerase family protein.	3-hydroxyacyl-CoA dehydrogenase.	0.535
ZPR_0261	ZPR_2596	enoyl-CoA hydratase/isomerase family protein.	acetoacetyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.901
ZPR_0261	ZPR_3230	enoyl-CoA hydratase/isomerase family protein.	3-hydroxybutyryl-CoA dehydrogenase.	0.724
ZPR_0261	ZPR_3659	enoyl-CoA hydratase/isomerase family protein.	Electron transfer flavoprotein subunit beta.	0.660
ZPR_0261	ZPR_3660	enoyl-CoA hydratase/isomerase family protein.	Electron transfer flavoprotein subunit alpha.	0.628
ZPR_0804	ZPR_2467	acyl-CoA binding protein.	acyl-CoA dehydrogenase.	0.694
ZPR_0804	ZPR_2468	acyl-CoA binding protein.	3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.689
ZPR_0804	ZPR_2596	acyl-CoA binding protein.	acetoacetyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.689
ZPR_2467	ZPR_0120	acyl-CoA dehydrogenase.	3-hydroxybutyryl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.879
ZPR_2467	ZPR_0261	acyl-CoA dehydrogenase.	enoyl-CoA hydratase/isomerase family protein.	0.781
ZPR_2467	ZPR_0804	acyl-CoA dehydrogenase.	acyl-CoA binding protein.	0.694