STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_2489RagB/SusD domain-containing protein. (525 aa)    
Predicted Functional Partners:
ZPR_2488
TonB-dependent receptor, plug.
 
 
   0.957
ZPR_1381
tonB dependent receptor.
 
 
   0.777
ZPR_2936
tonB-dependent Receptor Plug domain protein.
 
     0.758
ZPR_2487
Two-component system sensor histidine kinase/response regulator, hybrid.
 
   
 0.752
ZPR_0904
tonB-dependent Receptor Plug domain protein.
 
 
   0.745
ZPR_0905
tonB dependent receptor.
 
     0.738
ZPR_3694
Putative outer membrane protein, probably involved in nutrient binding.
 
 
   0.730
ZPR_4388
Protein containing Y_Y_Y domain.
  
     0.729
ZPR_3484
Putative outer membrane protein, probably involved in nutrient binding.
 
 
   0.727
ZPR_3508
TonB-dependent outer membrane receptor.
 
     0.722
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.