Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_3115Response regulatory protein, sigma 54 related protein. (388 aa)    
Predicted Functional Partners:
ZPR_4539
RNA polymerase sigma-54 factor.
 
  
 0.800
ZPR_3117
Small-conductance mechanosensitive ion channel protein.
       0.781
ZPR_3118
ABC-type transporter permease protein.
       0.781
ZPR_3119
ABC-type transporter ATP-binding protein.
       0.781
ZPR_3116
Conserved hypothetical protein.
       0.778
ZPR_0119
Two-component system sensor histidine kinase.
 
 0.704
ZPR_2280
Two-component system sensor histidine kinase/methyl-esterase/transferase hybrid.
  
 
 0.646
ZPR_2293
Two-component system sensor histidine kinase/response regulator hybrid.
 
 
 0.619
ZPR_2210
Two-component system sensor histidine kinase.
 
 
 0.551
ZPR_3120
beta-Ig-H3/fasciclin.
       0.485
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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