ZPR_3133 protein (Zunongwangia profunda) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ZPR_3133

P-II family protein; Belongs to the P(II) protein family. (112 aa)

Predicted Functional Partners:

ZPR_3134

0.991

ZPR_4080

0.923

ZPR_2702

0.657

ZPR_3938

0.615

ZPR_3155

0.536

crcB

0.529

ZPR_3135

0.496

ZPR_3131

0.459

purL

0.404

Your Current Organism:

Zunongwangia profunda

NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ZPR_2702	ZPR_3133	ZPR_2702	ZPR_3133	Periplasmic substrate-binding protein.	P-II family protein; Belongs to the P(II) protein family.	0.657
ZPR_2702	ZPR_3938	ZPR_2702	ZPR_3938	Periplasmic substrate-binding protein.	Glutamate synthase (NADPH) large subunit.	0.410
ZPR_2702	ZPR_4080	ZPR_2702	ZPR_4080	Periplasmic substrate-binding protein.	Nitrogen regulatory protein P-II.	0.657
ZPR_3131	ZPR_3133	ZPR_3131	ZPR_3133	Transcriptional activator.	P-II family protein; Belongs to the P(II) protein family.	0.459
ZPR_3131	ZPR_3134	ZPR_3131	ZPR_3134	Transcriptional activator.	Ammonium transporter.	0.409
ZPR_3131	crcB	ZPR_3131	ZPR_3132	Transcriptional activator.	crcB-like protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.	0.799
ZPR_3133	ZPR_2702	ZPR_3133	ZPR_2702	P-II family protein; Belongs to the P(II) protein family.	Periplasmic substrate-binding protein.	0.657
ZPR_3133	ZPR_3131	ZPR_3133	ZPR_3131	P-II family protein; Belongs to the P(II) protein family.	Transcriptional activator.	0.459
ZPR_3133	ZPR_3134	ZPR_3133	ZPR_3134	P-II family protein; Belongs to the P(II) protein family.	Ammonium transporter.	0.991
ZPR_3133	ZPR_3135	ZPR_3133	ZPR_3135	P-II family protein; Belongs to the P(II) protein family.	Conserved hypothetical protein.	0.496
ZPR_3133	ZPR_3155	ZPR_3133	ZPR_3155	P-II family protein; Belongs to the P(II) protein family.	Glutamine synthetase.	0.536
ZPR_3133	ZPR_3938	ZPR_3133	ZPR_3938	P-II family protein; Belongs to the P(II) protein family.	Glutamate synthase (NADPH) large subunit.	0.615
ZPR_3133	ZPR_4080	ZPR_3133	ZPR_4080	P-II family protein; Belongs to the P(II) protein family.	Nitrogen regulatory protein P-II.	0.923
ZPR_3133	crcB	ZPR_3133	ZPR_3132	P-II family protein; Belongs to the P(II) protein family.	crcB-like protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.	0.529
ZPR_3133	purL	ZPR_3133	ZPR_2473	P-II family protein; Belongs to the P(II) protein family.	Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.	0.404
ZPR_3134	ZPR_3131	ZPR_3134	ZPR_3131	Ammonium transporter.	Transcriptional activator.	0.409
ZPR_3134	ZPR_3133	ZPR_3134	ZPR_3133	Ammonium transporter.	P-II family protein; Belongs to the P(II) protein family.	0.991
ZPR_3134	ZPR_3135	ZPR_3134	ZPR_3135	Ammonium transporter.	Conserved hypothetical protein.	0.599
ZPR_3134	ZPR_3155	ZPR_3134	ZPR_3155	Ammonium transporter.	Glutamine synthetase.	0.517
ZPR_3134	ZPR_3938	ZPR_3134	ZPR_3938	Ammonium transporter.	Glutamate synthase (NADPH) large subunit.	0.816