STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_3203anti-ECFsigma factor, ChrR. (259 aa)    
Predicted Functional Partners:
ZPR_3204
Conserved hypothetical protein.
 
    0.919
ZPR_3202
RNA polymerase, sigma-24 subunit, ECF subfamily protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.905
ZPR_3205
Hypothetical protein.
 
    0.885
ZPR_3302
Conserved hypothetical protein.
  
     0.683
ZPR_4632
Putative FtsX-related transmembrane transport protein.
  
     0.499
ZPR_4642
FtsX family membrane protein.
  
     0.449
ZPR_2093
pspA/IM30 family protein.
  
  
 0.411
ZPR_4643
FtsX family membrane protein.
  
     0.410
ZPR_4640
Putative ABC transporter permease.
  
     0.407
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.