Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ZPR_3231Conserved hypothetical protein. (411 aa)    
Predicted Functional Partners:
ZPR_0160
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
 
      0.671
ZPR_3232
Alanine racemase; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
       0.649
miaA
tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
       0.581
ZPR_3230
3-hydroxybutyryl-CoA dehydrogenase.
       0.571
ZPR_3233
Exonuclease family protein.
       0.558
ZPR_3235
Voltage-dependent potassium channel.
       0.558
ZPR_3229
GFO/IDH/MocA family oxidoreductase.
 
     0.553
ZPR_3234
Conserved hypothetical protein.
       0.527
ZPR_3742
Aspartate aminotransferase.
 
     0.448
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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