Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_3376Putative regulatory protein. (188 aa)    
Predicted Functional Partners:
ZPR_3377
Hypothetical protein.
       0.752
ZPR_1279
Bacterial regulatory helix-turn-helix protein.
  
     0.620
ZPR_3378
Putative metal transport-related, exported protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.553
ZPR_3379
Conserved hypothetical protein.
       0.546
ZPR_3261
Transcriptional regulator.
  
     0.523
ZPR_3380
Conserved hypothetical protein.
 
     0.523
ZPR_1018
Putative transcriptional regulator.
  
   0.504
ZPR_1510
Putative AraC-family regulatory protein.
  
   0.483
ZPR_2634
AraC family transcriptional regulator.
  
     0.475
ZPR_4097
Transcriptional regulator.
  
     0.442
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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