Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ZPR_3483RagB/SusD domain protein. (588 aa)    
Predicted Functional Partners:
ZPR_3482
Putative outer membrane protein, probably involved in nutrient binding.
 
     0.927
ZPR_3484
Putative outer membrane protein, probably involved in nutrient binding.
 
 
   0.910
ZPR_3170
Putative outer membrane protein, probably involved in nutrient binding.
  
 
   0.801
ZPR_0223
tonB-dependent Receptor Plug domain protein.
  
 
   0.796
ZPR_4655
tonB-dependent Receptor Plug domain protein.
  
     0.770
ZPR_3481
Putative outer membrane protein, probably involved in nutrient binding.
 
    
0.759
ZPR_1623
Putative outer membrane protein, probably involved in nutrient binding.
  
 
   0.745
ZPR_1554
tonB-dependent Receptor Plug domain protein.
  
     0.736
ZPR_4224
tonB-dependent Receptor Plug domain protein.
  
 
   0.719
ZPR_2950
Conserved hypothetical protein.
  
     0.707
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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