Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_3496Site-specific recombinase. (519 aa)    
Predicted Functional Partners:
ZPR_3494
Conserved hypothetical protein.
 
     0.609
ZPR_3495
Hypothetical protein.
       0.586
ZPR_3456
Putative DNA methylase.
 
     0.549
ZPR_3492
Conserved hypothetical protein.
 
     0.544
ZPR_3459
Conserved hypothetical protein.
  
     0.468
ZPR_3460
Conserved hypothetical protein.
  
     0.461
ZPR_3461
Conserved hypothetical protein.
  
     0.451
ZPR_3493
Conserved hypothetical protein.
       0.447
ZPR_3458
Type IV secretory pathway VirB4 components-like protein.
 
    0.421
ZPR_3421
Type IV secretory pathway VirD4 components-like protein.
 
    0.405
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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