STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_3552Protein containing peptidase M16 domain; Belongs to the peptidase M16 family. (934 aa)    
Predicted Functional Partners:
ZPR_1401
Cytochrome c oxidase, subunit II.
  
 0.935
ZPR_3554
RagB/SusD domain-containing protein.
 
     0.897
ZPR_3555
Protein containing tonB-dependent Receptor Plug Domain.
 
     0.891
ZPR_3553
Hypothetical protein.
       0.773
ZPR_3551
Hypothetical protein.
       0.723
ZPR_3556
anti-FecI sigma factor, FecR.
 
     0.685
ZPR_3550
Calcineurin-like phosphoesterase.
 
     0.667
atpA
F0F1 ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
   
 0.656
ZPR_2137
Ferredoxin-like protein.
  
 
 0.626
ZPR_1406
Rieske (2Fe-2S) domain-containing protein.
   
 0.618
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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