Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_3576Conserved hypothetical protein. (108 aa)    
Predicted Functional Partners:
ZPR_3573
Sensory transduction histidine kinase.
 
   
 0.960
ZPR_3572
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase.
 
     0.955
ZPR_3571
Response regulator receiver domain protein (CheY).
 
 
 0.954
ZPR_3575
Histidine kinase/response regulator.
 
   
 0.944
ZPR_3577
Two-component system response regulator.
 
     0.898
ZPR_3574
Protein containing FIST C domain.
 
     0.886
ZPR_1045
Glycosyl transferase, family 2.
 
 
 0.784
ZPR_1051
TPR repeat protein.
  
     0.764
ZPR_1046
Integral membrane protein.
  
     0.761
ZPR_1050
Polysaccharide transporter.
 
     0.758
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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