Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_3577Two-component system response regulator. (240 aa)    
Predicted Functional Partners:
ZPR_3576
Conserved hypothetical protein.
 
     0.898
ZPR_3571
Response regulator receiver domain protein (CheY).
 
     0.825
ZPR_3573
Sensory transduction histidine kinase.
 
     0.823
ZPR_0303
Histidine kinase.
 
   0.820
ZPR_2846
Two-component system sensor histidine kinase.
 
   0.820
ZPR_4185
Histidine kinase internal region.
 
   0.820
ZPR_4432
Regulator of cell autolysis.
 
   0.820
ZPR_4680
DEAD/DEAH box helicase-like protein.
 
   0.820
ZPR_2213
Histidine kinase.
 
   0.817
ZPR_2429
Histidine kinase.
 
   0.817
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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