ZPR_3589 protein (Zunongwangia profunda) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ZPR_3589

Thioesterase superfamily protein. (113 aa)

Predicted Functional Partners:

dnaA

0.568

ZPR_3591

0.501

ZPR_3677

0.500

ZPR_3592

0.481

ZPR_2769

0.449

Your Current Organism:

Zunongwangia profunda

NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ZPR_2769	ZPR_3589	ZPR_2769	ZPR_3589	Acyl-carrier protein.	Thioesterase superfamily protein.	0.449
ZPR_2769	ZPR_3677	ZPR_2769	ZPR_3677	Acyl-carrier protein.	Malonyl CoA-acyl carrier protein transacylase.	0.903
ZPR_3589	ZPR_2769	ZPR_3589	ZPR_2769	Thioesterase superfamily protein.	Acyl-carrier protein.	0.449
ZPR_3589	ZPR_3591	ZPR_3589	ZPR_3591	Thioesterase superfamily protein.	Low molecular weight phosphotyrosine protein phosphatase.	0.501
ZPR_3589	ZPR_3592	ZPR_3589	ZPR_3592	Thioesterase superfamily protein.	uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.	0.481
ZPR_3589	ZPR_3677	ZPR_3589	ZPR_3677	Thioesterase superfamily protein.	Malonyl CoA-acyl carrier protein transacylase.	0.500
ZPR_3589	dnaA	ZPR_3589	ZPR_3590	Thioesterase superfamily protein.	Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.	0.568
ZPR_3591	ZPR_3589	ZPR_3591	ZPR_3589	Low molecular weight phosphotyrosine protein phosphatase.	Thioesterase superfamily protein.	0.501
ZPR_3591	ZPR_3592	ZPR_3591	ZPR_3592	Low molecular weight phosphotyrosine protein phosphatase.	uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.	0.934
ZPR_3591	dnaA	ZPR_3591	ZPR_3590	Low molecular weight phosphotyrosine protein phosphatase.	Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.	0.909
ZPR_3592	ZPR_3589	ZPR_3592	ZPR_3589	uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.	Thioesterase superfamily protein.	0.481
ZPR_3592	ZPR_3591	ZPR_3592	ZPR_3591	uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.	Low molecular weight phosphotyrosine protein phosphatase.	0.934
ZPR_3592	dnaA	ZPR_3592	ZPR_3590	uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.	Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.	0.894
ZPR_3677	ZPR_2769	ZPR_3677	ZPR_2769	Malonyl CoA-acyl carrier protein transacylase.	Acyl-carrier protein.	0.903
ZPR_3677	ZPR_3589	ZPR_3677	ZPR_3589	Malonyl CoA-acyl carrier protein transacylase.	Thioesterase superfamily protein.	0.500
dnaA	ZPR_3589	ZPR_3590	ZPR_3589	Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.	Thioesterase superfamily protein.	0.568
dnaA	ZPR_3591	ZPR_3590	ZPR_3591	Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.	Low molecular weight phosphotyrosine protein phosphatase.	0.909
dnaA	ZPR_3592	ZPR_3590	ZPR_3592	Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.	uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.	0.894