STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_3754Protein containing zinc ribbon domain. (259 aa)    
Predicted Functional Partners:
ZPR_3753
Conserved hypothetical protein; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
 
  
 0.927
ZPR_0618
Surface antigen D15 family outer membrane protein.
  
     0.754
ZPR_0176
Conserved hypothetical protein.
 
     0.735
ZPR_3246
Conserved hypothetical protein.
 
     0.722
ZPR_2529
Conserved hypothetical protein.
  
     0.713
ZPR_0488
uroporphyrinogen-III synthase.
  
     0.710
ZPR_1142
Lipoprotein releasing system transmembrane protein.
  
     0.707
ZPR_0477
Conserved hypothetical protein.
  
     0.680
ZPR_1083
Conserved hypothetical protein.
  
     0.676
nusA
Transcription elongation factor NusA; Participates in both transcription termination and antitermination.
  
     0.673
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.