ZPR_4080 protein (Zunongwangia profunda) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ZPR_4080

Nitrogen regulatory protein P-II. (112 aa)

Predicted Functional Partners:

ZPR_3134

0.973

ZPR_3133

0.923

ZPR_4078

0.783

ZPR_4079

0.780

ZPR_3938

0.672

ZPR_4081

0.614

ZPR_4477

0.611

ZPR_4077

0.595

ZPR_0057

0.591

ZPR_0320

0.591

Your Current Organism:

Zunongwangia profunda

NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ZPR_0057	ZPR_3133	Protein containing tetratricopeptide region.	P-II family protein; Belongs to the P(II) protein family.	0.591
ZPR_0057	ZPR_4080	Protein containing tetratricopeptide region.	Nitrogen regulatory protein P-II.	0.591
ZPR_0320	ZPR_3133	Aerotolerance-related protein BatC.	P-II family protein; Belongs to the P(II) protein family.	0.591
ZPR_0320	ZPR_4080	Aerotolerance-related protein BatC.	Nitrogen regulatory protein P-II.	0.591
ZPR_3133	ZPR_0057	P-II family protein; Belongs to the P(II) protein family.	Protein containing tetratricopeptide region.	0.591
ZPR_3133	ZPR_0320	P-II family protein; Belongs to the P(II) protein family.	Aerotolerance-related protein BatC.	0.591
ZPR_3133	ZPR_3134	P-II family protein; Belongs to the P(II) protein family.	Ammonium transporter.	0.993
ZPR_3133	ZPR_3938	P-II family protein; Belongs to the P(II) protein family.	Glutamate synthase (NADPH) large subunit.	0.685
ZPR_3133	ZPR_4080	P-II family protein; Belongs to the P(II) protein family.	Nitrogen regulatory protein P-II.	0.923
ZPR_3133	ZPR_4477	P-II family protein; Belongs to the P(II) protein family.	Protein containing tetratricopeptide repeat.	0.611
ZPR_3134	ZPR_3133	Ammonium transporter.	P-II family protein; Belongs to the P(II) protein family.	0.993
ZPR_3134	ZPR_3938	Ammonium transporter.	Glutamate synthase (NADPH) large subunit.	0.863
ZPR_3134	ZPR_4080	Ammonium transporter.	Nitrogen regulatory protein P-II.	0.973
ZPR_3938	ZPR_3133	Glutamate synthase (NADPH) large subunit.	P-II family protein; Belongs to the P(II) protein family.	0.685
ZPR_3938	ZPR_3134	Glutamate synthase (NADPH) large subunit.	Ammonium transporter.	0.863
ZPR_3938	ZPR_4079	Glutamate synthase (NADPH) large subunit.	Conserved hypothetical protein; Belongs to the Fur family.	0.405
ZPR_3938	ZPR_4080	Glutamate synthase (NADPH) large subunit.	Nitrogen regulatory protein P-II.	0.672
ZPR_4077	ZPR_4078	Predicted membrane protein.	Conserved hypothetical protein.	0.683
ZPR_4077	ZPR_4079	Predicted membrane protein.	Conserved hypothetical protein; Belongs to the Fur family.	0.610
ZPR_4077	ZPR_4080	Predicted membrane protein.	Nitrogen regulatory protein P-II.	0.595