Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ZPR_4206Arginine decarboxylase. (464 aa)    
Predicted Functional Partners:
ZPR_2018
Agmatine deiminase; Belongs to the agmatine deiminase family.
    
 0.921
ZPR_4204
Deoxyhypusine synthase.
 
     0.894
ZPR_4205
Agmatinase; Belongs to the arginase family.
 
  
 0.867
ZPR_2136
acyl-CoA reductase.
  
   
 0.617
ZPR_2714
Conserved hypothetical protein.
 
     0.568
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
 
  
 0.510
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
 
    0.505
ZPR_0495
Acyl-protein synthetase, LuxE.
  
     0.494
ZPR_3677
Malonyl CoA-acyl carrier protein transacylase.
   
    0.441
ZPR_4207
Putative ribosomal large subunit pseudouridine synthase.
       0.407
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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