Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_4263Conserved hypothetical protein. (407 aa)    
Predicted Functional Partners:
ZPR_4264
Imelysin.
 
   
 0.931
ZPR_4261
Conserved hypothetical protein.
 
     0.599
ZPR_4262
Hypothetical protein.
       0.566
ZPR_4272
KAP P-loop domain-containing protein.
  
     0.544
ZPR_3702
Conserved hypothetical protein.
  
     0.499
ZPR_4248
Protein containing yceI-like domain; Belongs to the UPF0312 family.
  
     0.477
ZPR_1199
Membrane protein.
  
     0.427
ZPR_4258
Putative regulatory protein.
 
     0.421
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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