Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_4306BlaI-like antibiotic resistance-related regulatory protein. (120 aa)    
Predicted Functional Partners:
ZPR_4305
blaR1 peptidase M56.
 
 
 0.995
ZPR_4304
blaR1 peptidase M56.
 
 
 0.994
ZPR_3160
BlaR1 peptidase M56 family protein.
 
 
 0.980
ZPR_2080
Conserved hypothetical transmembrane protein.
  
 
 0.930
ZPR_3159
Peptidase M56.
 
  
 0.832
ZPR_4302
TPR repeat-containing protein.
  
    0.599
ZPR_4303
Hypothetical protein.
       0.495
ZPR_4301
Conserved hypothetical protein.
       0.471
ZPR_0593
TonB family protein.
 
  
 0.445
ZPR_3565
TonB protein.
 
  
 0.445
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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