Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_4381Conserved hypothetical protein. (412 aa)    
Predicted Functional Partners:
ZPR_4382
ragB/SusD family protein.
 
 
   0.947
ZPR_4380
Glycosyl hydrolase family 76.
 
    0.925
ZPR_4383
tonB-dependent Receptor Plug domain protein.
 
     0.910
ZPR_4379
Transcriptional repressor.
 
     0.901
ZPR_4384
Glycosyl hydrolase family 92.
 
     0.829
ZPR_4378
ROK family member transcriptional repressor.
 
     0.725
ZPR_4385
Transcriptional regulator.
 
     0.693
ZPR_0751
Conserved hypothetical protein.
  
 
   0.659
ZPR_0749
Conserved hypothetical protein.
  
 
   0.655
ZPR_0750
tonB dependent receptor.
  
     0.642
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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