STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_4388Protein containing Y_Y_Y domain. (974 aa)    
Predicted Functional Partners:
ZPR_3078
Protein containing tetratricopeptide repeat.
 
 
 0.815
ZPR_4391
Putative outer membrane protein.
 
     0.759
ZPR_4389
tonB-dependent Receptor Plug domain protein.
 
     0.734
ZPR_2489
RagB/SusD domain-containing protein.
  
     0.729
ZPR_4393
Hypothetical protein.
 
     0.698
ZPR_3694
Putative outer membrane protein, probably involved in nutrient binding.
  
     0.606
ZPR_2488
TonB-dependent receptor, plug.
  
     0.589
ZPR_1380
Conserved hypothetical protein.
  
     0.565
ZPR_3693
Putative outer membrane protein probably involved in nutrient binding.
  
     0.535
ZPR_4387
Secreted protein.
       0.515
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.