Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_4399Probable bacteriocin/lantibiotic ABC transporter, ATP-binding protein. (722 aa)    
Predicted Functional Partners:
ZPR_4404
Secretion protein HlyD family protein.
 
 
 0.898
ZPR_3733
ABC-type transporter ATP-binding and permease component.
  
   0.847
ZPR_4398
Asp_protease.
       0.705
ZPR_4397
Metal-dependent membrane protease.
     
 0.681
ZPR_0608
HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.549
ZPR_2947
Outer membrane efflux protein.
  
 
 0.549
ZPR_3569
Secretion protein HlyD family protein.
  
 
 0.549
ZPR_4649
Putative xylanase.
  
    0.462
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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