STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_4444Conserved hypothetical protein. (237 aa)    
Predicted Functional Partners:
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
      0.854
ZPR_4445
DNA-3-methyladenine glycosylase.
       0.781
ZPR_4542
Biopolymer transport protein ExbD/TolR.
 
 
 0.778
ZPR_0480
Conserved hypothetical protein.
  
     0.764
ZPR_4543
Biopolymer transport protein ExbD/TolR.
 
 
 0.734
ZPR_3484
Putative outer membrane protein, probably involved in nutrient binding.
  
 
 0.730
ZPR_3897
OmpA/MotB family outer membrane protein.
 
 
 0.715
ZPR_2027
Conserved hypothetical protein.
  
     0.713
ZPR_3667
TonB protein.
  
     0.686
ZPR_3880
TonB-dependent outer membrane receptor.
  
 
 0.686
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.