Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_4597M28 family peptidase. (771 aa)    
Predicted Functional Partners:
ZPR_3107
Conserved hypothetical protein.
  
     0.581
ZPR_4598
Conserved hypothetical protein.
  
    0.565
ZPR_0599
Membrane or secreted protein.
  
     0.558
ZPR_4596
Inosine monophosphate dehydrogenase-related protein.
       0.558
ZPR_2067
Membrane or secreted protein.
  
     0.554
ZPR_1907
Conserved hypothetical protein.
  
     0.553
ZPR_0890
Secreted protein.
  
     0.537
ZPR_0692
Conserved hypothetical protein.
  
    0.532
ZPR_0954
Conserved hypothetical protein.
  
     0.481
ZPR_3161
Conserved hypothetical protein.
  
     0.457
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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