Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZPR_4652tonB-dependent Receptor Plug domain protein. (1052 aa)    
Predicted Functional Partners:
ZPR_4651
ragB/SusD family protein.
 
 
   0.943
ZPR_4650
Conserved hypothetical protein.
 
     0.889
ZPR_4340
Putative outer membrane protein.
  
 
   0.814
ZPR_3189
ragB/SusD family protein.
 
 
   0.789
ZPR_4382
ragB/SusD family protein.
  
 
   0.781
ZPR_4339
Conserved hypothetical protein.
  
     0.774
ZPR_4656
ragB/SusD family protein.
  
 
   0.768
ZPR_4223
Putative outer membrane protein probably involved in nutrient binding.
  
 
   0.736
ZPR_1380
Conserved hypothetical protein.
 
     0.732
ZPR_3481
Putative outer membrane protein, probably involved in nutrient binding.
  
 
   0.713
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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