Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ZPR_4672HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification. (1000 aa)    
Predicted Functional Partners:
ZPR_4675
Type I restriction-modification system DNA methylase.
 
  
 0.943
ZPR_4673
Restriction modification system DNA specificity subunit.
 
  
 0.941
ZPR_3435
Type I restriction-modification system methyltransferase subunit like protein.
 
  
 0.894
ZPR_3434
Conserved hypothetical protein.
 
  
 0.877
ZPR_0879
Type I restriction-modification system, M subunit.
 
  
 0.774
ZPR_4671
Hypothetical protein.
       0.693
ZPR_4122
Putative DNA methylase HsdM.
 
  
 0.635
ZPR_4674
Protein containing KAP family P-loop domain.
       0.506
ZPR_0880
Restriction modification system DNA specificity subunit.
  
  
 0.484
ZPR_4124
Type I restriction-modification system specificity determinant.
  
  
 0.484
Your Current Organism:
Zunongwangia profunda
NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87
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