MAC_00048 protein (Metarhizium acridum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MAC_00048

RNA polymerase II subunit 3. (362 aa)

Predicted Functional Partners:

MAC_01379

0.999

MAC_02463

0.999

MAC_03334

0.999

MAC_04149

0.999

MAC_05288

0.999

MAC_05433

0.999

MAC_05932

0.999

MAC_06247

0.999

MAC_07185

0.999

MAC_07408

0.999

Your Current Organism:

Metarhizium acridum

NCBI taxonomy Id: 655827
Other names: M. acridum CQMa 102, Metarhizium acridum CQMa 102, Metarhizium anisopliae var. acridum CQMa 102

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MAC_00048	MAC_01379	E9DRX5	E9DUT1	RNA polymerase II subunit 3.	DNA-directed RNA polymerases II 24 kDa polypeptide.	0.999
MAC_00048	MAC_02463	E9DRX5	E9DXW5	RNA polymerase II subunit 3.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
MAC_00048	MAC_03334	E9DRX5	E9E0D6	RNA polymerase II subunit 3.	DNA directed RNA polymerase II 15 kDa subunit, putative.	0.999
MAC_00048	MAC_04149	E9DRX5	E9E2Q1	RNA polymerase II subunit 3.	Putative DNA-directed RNA polymerase II chain Rpb7.	0.999
MAC_00048	MAC_05288	E9DRX5	E9E5Z0	RNA polymerase II subunit 3.	RNA polymerase Rpb4 family protein.	0.999
MAC_00048	MAC_05433	E9DRX5	E9E6D5	RNA polymerase II subunit 3.	Metallothionein-I gene transcription activator.	0.999
MAC_00048	MAC_05932	E9DRX5	E9E7T4	RNA polymerase II subunit 3.	DNA-directed RNA polymerase II subunit RPB11.	0.999
MAC_00048	MAC_06247	E9DRX5	E9E8N2	RNA polymerase II subunit 3.	DNA-directed RNA polymerases I/II/III subunit 10.	0.999
MAC_00048	MAC_07185	E9DRX5	E9EBD7	RNA polymerase II subunit 3.	DNA-directed RNA polymerases I.	0.999
MAC_00048	MAC_07408	E9DRX5	E9EC10	RNA polymerase II subunit 3.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
MAC_01379	MAC_00048	E9DUT1	E9DRX5	DNA-directed RNA polymerases II 24 kDa polypeptide.	RNA polymerase II subunit 3.	0.999
MAC_01379	MAC_02463	E9DUT1	E9DXW5	DNA-directed RNA polymerases II 24 kDa polypeptide.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
MAC_01379	MAC_03334	E9DUT1	E9E0D6	DNA-directed RNA polymerases II 24 kDa polypeptide.	DNA directed RNA polymerase II 15 kDa subunit, putative.	0.999
MAC_01379	MAC_04149	E9DUT1	E9E2Q1	DNA-directed RNA polymerases II 24 kDa polypeptide.	Putative DNA-directed RNA polymerase II chain Rpb7.	0.999
MAC_01379	MAC_05288	E9DUT1	E9E5Z0	DNA-directed RNA polymerases II 24 kDa polypeptide.	RNA polymerase Rpb4 family protein.	0.999
MAC_01379	MAC_05433	E9DUT1	E9E6D5	DNA-directed RNA polymerases II 24 kDa polypeptide.	Metallothionein-I gene transcription activator.	0.999
MAC_01379	MAC_05932	E9DUT1	E9E7T4	DNA-directed RNA polymerases II 24 kDa polypeptide.	DNA-directed RNA polymerase II subunit RPB11.	0.999
MAC_01379	MAC_06247	E9DUT1	E9E8N2	DNA-directed RNA polymerases II 24 kDa polypeptide.	DNA-directed RNA polymerases I/II/III subunit 10.	0.999
MAC_01379	MAC_07185	E9DUT1	E9EBD7	DNA-directed RNA polymerases II 24 kDa polypeptide.	DNA-directed RNA polymerases I.	0.999
MAC_01379	MAC_07408	E9DUT1	E9EC10	DNA-directed RNA polymerases II 24 kDa polypeptide.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999