STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MAC_00538mRNA splicing protein (Prp39). (587 aa)    
Predicted Functional Partners:
MAC_06748
U2 small nuclear ribonucleoprotein A.
    
 
 0.994
MAC_05247
Eukaryotic Sm and Sm-like (LSm) protein.
    
 
 0.985
MAC_02512
Nuclear cap-binding protein subunit 2.
    
 
 0.975
MAC_03840
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
   
 
 0.963
MAC_00399
U1 small nuclear ribonucleoprotein.
    
 
 0.956
MAC_03344
U1 snRNP splicing complex subunit (Luc7).
   
 
 0.949
MAC_06522
SART-1 family protein.
   
 
 0.948
MAC_06419
Pre-mRNA splicing factor CEF1.
   
   0.947
MAC_07476
mRNA binding post-transcriptional regulator.
   
 
 0.937
MAC_00275
Rbm25 protein, putative.
   
 
 0.928
Your Current Organism:
Metarhizium acridum
NCBI taxonomy Id: 655827
Other names: M. acridum CQMa 102, Metarhizium acridum CQMa 102, Metarhizium anisopliae var. acridum CQMa 102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.