CMQ_6703 protein (Grosmannia clavigera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CMQ_6703

G2 m phase checkpoint control protein. (590 aa)

Predicted Functional Partners:

CMQ_5387

0.996

CMQ_2940

0.874

CMQ_509

0.809

CMQ_4273

0.793

CMQ_4499

0.793

CMQ_7123

0.754

LSM1

0.671

CMQ_3320

0.663

CMQ_7916

0.636

CMQ_709

0.635

Your Current Organism:

Grosmannia clavigera

NCBI taxonomy Id: 655863
Other names: G. clavigera kw1407, Grosmannia clavigera kw1407

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CMQ_2940	CMQ_3320	F0XHJ7	F0X846	Yjef n-terminal domain containing protein.	Topisomerase 2 associated protein.	0.979
CMQ_2940	CMQ_4273	F0XHJ7	F0XUQ0	Yjef n-terminal domain containing protein.	Uncharacterized protein.	0.973
CMQ_2940	CMQ_4499	F0XHJ7	F0XUQ4	Yjef n-terminal domain containing protein.	Decapping enzyme.	0.973
CMQ_2940	CMQ_509	F0XHJ7	F0XC66	Yjef n-terminal domain containing protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.573
CMQ_2940	CMQ_5387	F0XHJ7	F0XG31	Yjef n-terminal domain containing protein.	ATP dependent RNA helicase; Belongs to the DEAD box helicase family.	0.999
CMQ_2940	CMQ_6703	F0XHJ7	F0X7G9	Yjef n-terminal domain containing protein.	G2 m phase checkpoint control protein.	0.874
CMQ_2940	CMQ_7123	F0XHJ7	F0XP16	Yjef n-terminal domain containing protein.	Decapping enzyme.	0.984
CMQ_2940	CMQ_7916	F0XHJ7	F0XS98	Yjef n-terminal domain containing protein.	Cap-binding protein; Belongs to the eukaryotic initiation factor 4E family.	0.461
CMQ_2940	LSM1	F0XHJ7	F0XTZ5	Yjef n-terminal domain containing protein.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.866
CMQ_3320	CMQ_2940	F0X846	F0XHJ7	Topisomerase 2 associated protein.	Yjef n-terminal domain containing protein.	0.979
CMQ_3320	CMQ_4273	F0X846	F0XUQ0	Topisomerase 2 associated protein.	Uncharacterized protein.	0.970
CMQ_3320	CMQ_4499	F0X846	F0XUQ4	Topisomerase 2 associated protein.	Decapping enzyme.	0.970
CMQ_3320	CMQ_509	F0X846	F0XC66	Topisomerase 2 associated protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.671
CMQ_3320	CMQ_5387	F0X846	F0XG31	Topisomerase 2 associated protein.	ATP dependent RNA helicase; Belongs to the DEAD box helicase family.	0.996
CMQ_3320	CMQ_6703	F0X846	F0X7G9	Topisomerase 2 associated protein.	G2 m phase checkpoint control protein.	0.663
CMQ_3320	CMQ_7123	F0X846	F0XP16	Topisomerase 2 associated protein.	Decapping enzyme.	0.977
CMQ_3320	LSM1	F0X846	F0XTZ5	Topisomerase 2 associated protein.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.999
CMQ_4273	CMQ_2940	F0XUQ0	F0XHJ7	Uncharacterized protein.	Yjef n-terminal domain containing protein.	0.973
CMQ_4273	CMQ_3320	F0XUQ0	F0X846	Uncharacterized protein.	Topisomerase 2 associated protein.	0.970
CMQ_4273	CMQ_509	F0XUQ0	F0XC66	Uncharacterized protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.409