STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMQ_3954Uncharacterized protein. (1149 aa)    
Predicted Functional Partners:
CMQ_622
Transcription initiation factor tfiid subunit.
    
 
 0.763
CMQ_5753
DNA methyltransferase 1-associated protein dmap1.
    
 
 0.677
CMQ_3620
Transcription factor tfiid complex.
    
 
 0.656
CMQ_6566
Histone H2A; Belongs to the histone H2A family.
    
 
 0.647
CMQ_1916
F-box and wd domain containing protein.
    
 
 0.646
CMQ_2399
Uncharacterized protein.
   
 0.635
CMQ_5504
Casein kinase 2; Belongs to the protein kinase superfamily.
    
 
 0.590
CMQ_788
Histone deacetylase rpd3.
    
 0.488
CMQ_1024
RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.
    
 
 0.488
CMQ_8252
Histone deacetylase.
    
 0.488
Your Current Organism:
Grosmannia clavigera
NCBI taxonomy Id: 655863
Other names: G. clavigera kw1407, Grosmannia clavigera kw1407
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.