STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMQ_5378Krueppel c2h2-type zinc finger protein. (1068 aa)    
Predicted Functional Partners:
CMQ_3490
Nitrate reductase.
    
 0.801
CMQ_7632
Sam domain containing protein.
    
 0.656
CMQ_5877
Chromatin remodeling complex subunit.
    
 0.635
CMQ_1024
RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.
    
  0.624
CMQ_6185
Ankyrin repeat-containing protein.
    
 0.623
CMQ_3546
RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.622
CMQ_5141
High-affinity nicotinic acid transporter.
 
  
   0.622
CMQ_7390
40S ribosomal protein s20.
    
  0.606
CMQ_8006
37S ribosomal protein.
    
  0.602
CMQ_1323
RNA polymerase 3 transcription factor.
    
 0.601
Your Current Organism:
Grosmannia clavigera
NCBI taxonomy Id: 655863
Other names: G. clavigera kw1407, Grosmannia clavigera kw1407
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.