Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CMQ_2520 | CMQ_3970 | F0XGF5 | F0X835 | Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. | Ribosomal protein l1. | 0.990 |
CMQ_2520 | CMQ_4032 | F0XGF5 | F0X869 | Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. | RNA processing factor 1. | 0.975 |
CMQ_2520 | CMQ_4577 | F0XGF5 | F0XTH1 | Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. | Nucleolar RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.996 |
CMQ_2520 | CMQ_4615 | F0XGF5 | F0XTN8 | Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. | Ribosomal biogenesis protein gar2. | 0.995 |
CMQ_2520 | CMQ_4796 | F0XGF5 | F0XV46 | Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. | RNA helicase. | 0.995 |
CMQ_2520 | CMQ_56 | F0XGF5 | F0XRG2 | Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. | rRNA processing protein. | 0.988 |
CMQ_2520 | CMQ_5929 | F0XGF5 | F0XIE1 | Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. | 60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. | 0.990 |
CMQ_2520 | CMQ_7741 | F0XGF5 | F0XQ40 | Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. | Ribosome biogenesis protein rlp24. | 0.999 |
CMQ_2520 | CMQ_7836 | F0XGF5 | F0XS96 | Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. | Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. | 0.997 |
CMQ_2520 | YTM1 | F0XGF5 | F0XEG3 | Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. | Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. | 0.991 |
CMQ_3970 | CMQ_2520 | F0X835 | F0XGF5 | Ribosomal protein l1. | Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. | 0.990 |
CMQ_3970 | CMQ_4032 | F0X835 | F0X869 | Ribosomal protein l1. | RNA processing factor 1. | 0.985 |
CMQ_3970 | CMQ_4577 | F0X835 | F0XTH1 | Ribosomal protein l1. | Nucleolar RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.993 |
CMQ_3970 | CMQ_4615 | F0X835 | F0XTN8 | Ribosomal protein l1. | Ribosomal biogenesis protein gar2. | 0.999 |
CMQ_3970 | CMQ_4796 | F0X835 | F0XV46 | Ribosomal protein l1. | RNA helicase. | 0.997 |
CMQ_3970 | CMQ_56 | F0X835 | F0XRG2 | Ribosomal protein l1. | rRNA processing protein. | 0.994 |
CMQ_3970 | CMQ_5929 | F0X835 | F0XIE1 | Ribosomal protein l1. | 60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. | 0.990 |
CMQ_3970 | CMQ_7741 | F0X835 | F0XQ40 | Ribosomal protein l1. | Ribosome biogenesis protein rlp24. | 0.986 |
CMQ_3970 | CMQ_7836 | F0X835 | F0XS96 | Ribosomal protein l1. | Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. | 0.993 |
CMQ_3970 | YTM1 | F0X835 | F0XEG3 | Ribosomal protein l1. | Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. | 0.992 |
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