STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMQ_6139Dead deah box DNA helicase. (1480 aa)    
Predicted Functional Partners:
CMQ_1411
CID domain-containing protein.
   
 0.992
CMQ_7414
Ap-2 adaptor complex subunit; Belongs to the adaptor complexes medium subunit family.
    
 0.900
CMQ_6035
Histidine triad nucleotide-binding protein.
 
      0.855
CMQ_3043
Small nucleolar ribonucleoprotein complex subunit putatrive.
   
 0.849
CMQ_4025
mRNA splicing factor.
    
 0.819
CMQ_2479
rRNA biogenesis protein.
  
 0.811
CMQ_5417
AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.
    
 0.805
CMQ_5565
AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.
    
 0.805
CMQ_5785
Rad60-SLD_2 domain-containing protein.
    
 0.805
CMQ_331
Ribosome biogenesis protein.
   
  0.793
Your Current Organism:
Grosmannia clavigera
NCBI taxonomy Id: 655863
Other names: G. clavigera kw1407, Grosmannia clavigera kw1407
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