STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMQ_6488C6 zinc finger domain containing protein. (936 aa)    
Predicted Functional Partners:
CMQ_7710
Ubiquitin ligase complex f-box protein.
    
 
 0.745
CMQ_6619
Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
    
 0.716
CMQ_2488
Nucleoside diphosphate kinase.
     
 0.701
CMQ_758
Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
   
 
 0.687
CMQ_3864
NADH pyrophosphatase.
    
  0.681
CMQ_8183
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
  0.680
CMQ_7210
SsDNA-binding protein.
   
 
 0.665
CMQ_7086
Putative thymidylate synthase.
  
 
 0.661
CMQ_4899
Thymidylate synthase.
  
 
 0.661
CMQ_4700
Transcriptional corepressor.
    
 
 0.660
Your Current Organism:
Grosmannia clavigera
NCBI taxonomy Id: 655863
Other names: G. clavigera kw1407, Grosmannia clavigera kw1407
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