STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMQ_2013RBR-type E3 ubiquitin transferase. (330 aa)    
Predicted Functional Partners:
CMQ_2436
Ubiquitin-conjugating enzyme.
    
 0.738
CMQ_5954
An1-type zinc finger protein.
   
 0.714
CMQ_3735
RBR-type E3 ubiquitin transferase.
    
 0.685
CMQ_1533
RBR-type E3 ubiquitin transferase.
    
 0.685
CMQ_7914
RBR-type E3 ubiquitin transferase.
    
 0.685
CMQ_4235
60S ribosomal protein l40.
    
  0.669
CMQ_4115
RNA polymerase 1 specific transcription initiation factor.
    
  0.669
CMQ_3662
BZIP domain-containing protein.
    
  0.662
CMQ_5418
Ubiquitin.
    
  0.662
CMQ_6941
Traf-like signal protein.
    
  0.586
Your Current Organism:
Grosmannia clavigera
NCBI taxonomy Id: 655863
Other names: G. clavigera kw1407, Grosmannia clavigera kw1407
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.