STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMQ_251Dhp1-interacting protein. (388 aa)    
Predicted Functional Partners:
CMQ_4845
RasGAP.
   
 
 0.992
CMQ_4757
3 exoribonuclease family protein.
   
   0.939
CMQ_1965
RNA processing protein.
   
 
 0.600
CMQ_2696
5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.
    
 
 0.587
CMQ_3742
RTR1-type domain-containing protein.
    
   0.579
CMQ_1766
Dead deah box RNA helicase.
   
 
 0.486
CMQ_1101
Exosome complex exonuclease rrp41.
   
   0.457
CMQ_1131
3 exoribonuclease family protein.
   
   0.445
CMQ_4615
Ribosomal biogenesis protein gar2.
   
 
 0.440
CMQ_486
Cell division control protein cdc48; Belongs to the AAA ATPase family.
   
   0.421
Your Current Organism:
Grosmannia clavigera
NCBI taxonomy Id: 655863
Other names: G. clavigera kw1407, Grosmannia clavigera kw1407
Server load: low (22%) [HD]