STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMQ_5494Uncharacterized protein. (402 aa)    
Predicted Functional Partners:
CMQ_4832
RNA polymerase 2 subunit 3.
    
 0.780
CMQ_796
Serine/threonine-protein kinase.
    
 0.718
CMQ_2965
Serine/threonine-protein kinase.
    
 0.718
CMQ_2899
Chromatin remodeling complex subunit; Belongs to the actin family.
    
 0.705
CMQ_1024
RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.
    
 0.700
CMQ_5387
ATP dependent RNA helicase; Belongs to the DEAD box helicase family.
   
 0.698
CMQ_7204
FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...]
    
 
 0.696
CMQ_7383
DNA-directed RNA polymerase and 3 subunit rpb6.
    
 0.687
CMQ_1687
DNA directed RNA polymerase 2 polypeptide d.
    
 0.686
CMQ_1366
DNA-directed RNA polymerase 2 subunit.
    
  0.685
Your Current Organism:
Grosmannia clavigera
NCBI taxonomy Id: 655863
Other names: G. clavigera kw1407, Grosmannia clavigera kw1407
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.