STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMQ_4335Splicing factor subunit 145kd. (644 aa)    
Predicted Functional Partners:
CMQ_1411
CID domain-containing protein.
   
 0.999
CMQ_3088
Splicing factor 3b subunit.
   
 0.999
CMQ_7102
Nuclear mRNA splicing factor protein.
   
 0.999
CMQ_165
Splicing factor 3b subunit 4.
   
 0.999
CMQ_3113
Splicing factor subunit; Belongs to the SF3B5 family.
    
 0.998
CMQ_8162
Pre-mRNA branch site protein.
    
 0.998
CMQ_5766
Pre-mRNA splicing factor ini1.
    
 0.998
CMQ_2413
Splicing factor 3a subunit.
   
 0.997
CMQ_2827
Small nuclear ribonucleoprotein a.
   
 0.996
CMQ_8150
Splicing factor 3a subunit.
   
 0.996
Your Current Organism:
Grosmannia clavigera
NCBI taxonomy Id: 655863
Other names: G. clavigera kw1407, Grosmannia clavigera kw1407
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.