STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMQ_4653DNA repair protein rad50. (1301 aa)    
Predicted Functional Partners:
CMQ_3625
Meiotic recombination protein mre11.
  
 0.999
CMQ_2475
DNA damage response protein.
   
 0.999
CMQ_1119
3-5 exonuclease helicase.
  
 0.995
CMQ_7794
Phosphotidylinositol kinase; Belongs to the PI3/PI4-kinase family.
   
 0.986
CMQ_6647
Jumonji family transcription factor.
    
  0.979
CMQ_5044
Inositol kinase kinase; Belongs to the PI3/PI4-kinase family.
   
 0.936
CMQ_3710
DNA/RNA helicase.
  
 0.933
CMQ_1531
Rad52 DNA repair protein radc.
    
 0.929
FEN1
Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]
  
 0.926
CMQ_3289
Dsb repair complex subunit.
   
 0.919
Your Current Organism:
Grosmannia clavigera
NCBI taxonomy Id: 655863
Other names: G. clavigera kw1407, Grosmannia clavigera kw1407
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