STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D5G7P6_TUBMMCCHC-type domain-containing protein. (1971 aa)    
Predicted Functional Partners:
D5GK26_TUBMM
Uncharacterized protein.
   
 
 0.965
D5GGQ7_TUBMM
RRM domain-containing protein.
    
 
 0.831
D5GKT6_TUBMM
Uncharacterized protein.
   
 
 0.802
D5GFS9_TUBMM
Uncharacterized protein.
   
 
 0.680
D5GM48_TUBMM
Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
    
 
 0.673
D5GM15_TUBMM
5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.
   
 
 0.664
D5GDB5_TUBMM
Uncharacterized protein.
   
  
 0.629
D5GGQ9_TUBMM
HRDC domain-containing protein.
    
 
 0.596
D5GK86_TUBMM
RNase III domain-containing protein.
   
 
 0.583
D5GLK0_TUBMM
Uncharacterized protein.
    
 
 0.581
Your Current Organism:
Tuber melanosporum
NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28
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