STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D5GA29_TUBMMUroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family. (363 aa)    
Predicted Functional Partners:
D5GFH6_TUBMM
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
 
 
 0.996
D5G6R4_TUBMM
Uncharacterized protein.
  
 0.990
D5GCH4_TUBMM
HEM4 domain-containing protein.
  
 
 0.989
D5GG30_TUBMM
Uncharacterized protein; Belongs to the precorrin methyltransferase family.
    
 0.988
D5GLE7_TUBMM
Uncharacterized protein.
 0.978
D5G8V9_TUBMM
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
 
  
 0.963
D5GPB7_TUBMM
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
  
 
 0.768
D5GA49_TUBMM
Uncharacterized protein.
  
 
 0.742
D5G5B9_TUBMM
Uncharacterized protein.
    
  0.722
D5GD53_TUBMM
4-hydroxybenzoate polyprenyltransferase, mitochondrial; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate.
  
  
 0.683
Your Current Organism:
Tuber melanosporum
NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28
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