D5GB63_TUBMM protein (Tuber melanosporum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D5GB63_TUBMM

Uncharacterized protein. (871 aa)

Predicted Functional Partners:

D5GME8_TUBMM

0.980

D5GNI7_TUBMM

0.953

D5GPH8_TUBMM

0.952

D5G5L8_TUBMM

0.950

D5GP17_TUBMM

0.950

D5GMC4_TUBMM

0.948

D5G747_TUBMM

0.947

D5G917_TUBMM

0.947

D5GHC9_TUBMM

0.947

D5GHR8_TUBMM

0.947

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G5L8_TUBMM	D5G747_TUBMM	D5G5L8	D5G747	G-patch domain-containing protein.	Sas10 domain-containing protein.	0.584
D5G5L8_TUBMM	D5G917_TUBMM	D5G5L8	D5G917	G-patch domain-containing protein.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.456
D5G5L8_TUBMM	D5GB63_TUBMM	D5G5L8	D5GB63	G-patch domain-containing protein.	Uncharacterized protein.	0.950
D5G5L8_TUBMM	D5GHC9_TUBMM	D5G5L8	D5GHC9	G-patch domain-containing protein.	MI domain-containing protein.	0.957
D5G5L8_TUBMM	D5GHR8_TUBMM	D5G5L8	D5GHR8	G-patch domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.586
D5G5L8_TUBMM	D5GMC4_TUBMM	D5G5L8	D5GMC4	G-patch domain-containing protein.	Uncharacterized protein.	0.969
D5G5L8_TUBMM	D5GME8_TUBMM	D5G5L8	D5GME8	G-patch domain-containing protein.	Uncharacterized protein.	0.979
D5G5L8_TUBMM	D5GNI7_TUBMM	D5G5L8	D5GNI7	G-patch domain-containing protein.	Uncharacterized protein.	0.955
D5G5L8_TUBMM	D5GP17_TUBMM	D5G5L8	D5GP17	G-patch domain-containing protein.	U3 small nucleolar RNA-associated protein 22.	0.483
D5G5L8_TUBMM	D5GPH8_TUBMM	D5G5L8	D5GPH8	G-patch domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.549
D5G747_TUBMM	D5G5L8_TUBMM	D5G747	D5G5L8	Sas10 domain-containing protein.	G-patch domain-containing protein.	0.584
D5G747_TUBMM	D5G917_TUBMM	D5G747	D5G917	Sas10 domain-containing protein.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.998
D5G747_TUBMM	D5GB63_TUBMM	D5G747	D5GB63	Sas10 domain-containing protein.	Uncharacterized protein.	0.947
D5G747_TUBMM	D5GHC9_TUBMM	D5G747	D5GHC9	Sas10 domain-containing protein.	MI domain-containing protein.	0.975
D5G747_TUBMM	D5GHR8_TUBMM	D5G747	D5GHR8	Sas10 domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
D5G747_TUBMM	D5GMC4_TUBMM	D5G747	D5GMC4	Sas10 domain-containing protein.	Uncharacterized protein.	0.999
D5G747_TUBMM	D5GME8_TUBMM	D5G747	D5GME8	Sas10 domain-containing protein.	Uncharacterized protein.	0.988
D5G747_TUBMM	D5GNI7_TUBMM	D5G747	D5GNI7	Sas10 domain-containing protein.	Uncharacterized protein.	0.990
D5G747_TUBMM	D5GP17_TUBMM	D5G747	D5GP17	Sas10 domain-containing protein.	U3 small nucleolar RNA-associated protein 22.	0.998
D5G747_TUBMM	D5GPH8_TUBMM	D5G747	D5GPH8	Sas10 domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.977