D5GM09_TUBMM protein (Tuber melanosporum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D5GM09_TUBMM

AMP-binding domain-containing protein. (103 aa)

Predicted Functional Partners:

D5G679_TUBMM

0.681

D5GE20_TUBMM

0.681

D5GB83_TUBMM

0.660

D5G6J1_TUBMM

0.654

D5GMB0_TUBMM

0.651

D5G7Q0_TUBMM

0.647

D5GJT3_TUBMM

0.647

D5GLB5_TUBMM

0.647

D5GM28_TUBMM

0.647

D5GM31_TUBMM

0.647

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G679_TUBMM	D5GB83_TUBMM	D5G679	D5GB83	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.711
D5G679_TUBMM	D5GE20_TUBMM	D5G679	D5GE20	Uncharacterized protein.	SCP2 domain-containing protein.	0.618
D5G679_TUBMM	D5GM09_TUBMM	D5G679	D5GM09	Uncharacterized protein.	AMP-binding domain-containing protein.	0.681
D5G6J1_TUBMM	D5G7Q0_TUBMM	D5G6J1	D5G7Q0	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	L51_S25_CI-B8 domain-containing protein.	0.993
D5G6J1_TUBMM	D5GB83_TUBMM	D5G6J1	D5GB83	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.977
D5G6J1_TUBMM	D5GJT3_TUBMM	D5G6J1	D5GJT3	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	Ribosomal_L18e/L15P domain-containing protein.	0.998
D5G6J1_TUBMM	D5GLB5_TUBMM	D5G6J1	D5GLB5	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	Uncharacterized protein.	0.994
D5G6J1_TUBMM	D5GM09_TUBMM	D5G6J1	D5GM09	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	AMP-binding domain-containing protein.	0.654
D5G6J1_TUBMM	D5GM28_TUBMM	D5G6J1	D5GM28	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.999
D5G6J1_TUBMM	D5GM31_TUBMM	D5G6J1	D5GM31	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	MRP-L46 domain-containing protein.	0.993
D5G6J1_TUBMM	D5GMB0_TUBMM	D5G6J1	D5GMB0	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	Uncharacterized protein.	0.998
D5G7Q0_TUBMM	D5G6J1_TUBMM	D5G7Q0	D5G6J1	L51_S25_CI-B8 domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	0.993
D5G7Q0_TUBMM	D5GB83_TUBMM	D5G7Q0	D5GB83	L51_S25_CI-B8 domain-containing protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.953
D5G7Q0_TUBMM	D5GJT3_TUBMM	D5G7Q0	D5GJT3	L51_S25_CI-B8 domain-containing protein.	Ribosomal_L18e/L15P domain-containing protein.	0.990
D5G7Q0_TUBMM	D5GLB5_TUBMM	D5G7Q0	D5GLB5	L51_S25_CI-B8 domain-containing protein.	Uncharacterized protein.	0.989
D5G7Q0_TUBMM	D5GM09_TUBMM	D5G7Q0	D5GM09	L51_S25_CI-B8 domain-containing protein.	AMP-binding domain-containing protein.	0.647
D5G7Q0_TUBMM	D5GM28_TUBMM	D5G7Q0	D5GM28	L51_S25_CI-B8 domain-containing protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.992
D5G7Q0_TUBMM	D5GM31_TUBMM	D5G7Q0	D5GM31	L51_S25_CI-B8 domain-containing protein.	MRP-L46 domain-containing protein.	0.995
D5G7Q0_TUBMM	D5GMB0_TUBMM	D5G7Q0	D5GMB0	L51_S25_CI-B8 domain-containing protein.	Uncharacterized protein.	0.989
D5GB83_TUBMM	D5G679_TUBMM	D5GB83	D5G679	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Uncharacterized protein.	0.711