Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AJP56313.1Gentisate 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (345 aa)    
Predicted Functional Partners:
AJP56951.1
Gentisate 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.919
AJP56310.1
Salicylate hydroxylase; Catalyzes the formation of catechol from salicylate; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.847
AJP56311.1
Maleylacetoacetate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.751
AJP57568.1
Metapyrocatechase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.707
AJP56669.1
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.688
AJP58521.1
Salicylate hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.637
AJP56312.1
5-carboxymethyl-2-hydroxymuconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.629
AJP59937.1
Salicylate hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.625
AJP56659.1
Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.613
AJP56314.1
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
 
     0.564
Your Current Organism:
Pandoraea vervacti
NCBI taxonomy Id: 656178
Other names: CCM 7667, DSM 23571, NBRC 106088, P. vervacti, Pandoraea sp. NS15, Pandoraea vervacti Sahin et al. 2011, strain NS15
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