STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJP58580.1Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)    
Predicted Functional Partners:
AJP57197.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.768
AJP57512.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.768
AJP58555.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.768
AJP58802.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.768
AJP59060.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.768
APD11389.1
Transposase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
0.681
UC34_14630
Transposase; Frameshifted; incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.484
Your Current Organism:
Pandoraea vervacti
NCBI taxonomy Id: 656178
Other names: CCM 7667, DSM 23571, NBRC 106088, P. vervacti, Pandoraea sp. NS15, Pandoraea vervacti Sahin et al. 2011, strain NS15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.