STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM29412.1DNA-directed RNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (824 aa)    
Predicted Functional Partners:
rsmA
16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
   
 0.987
AKM29413.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  
 0.736
AKM32479.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.726
AKM29401.2
DNA maturase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.650
AKM29414.1
RNase H superfamily protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.590
AKM29416.2
DNA polymerase A family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.559
AKM29415.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.557
AKM32478.1
Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.557
AKM32604.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.550
Your Current Organism:
Pandoraea faecigallinarum
NCBI taxonomy Id: 656179
Other names: CCM 2766, DSM 23572, NBRC 106092, P. faecigallinarum, Pandoraea faecigallinarum Sahin et al. 2011, Pandoraea sp. KOx, strain KOx
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.